Gene regulation, cell fate, and the evolution of neural diversity

We study how the dynamics of gene regulation decide what a cell becomes and how those decisions have been modified across species to build different brains. 

Research

The lab

Our work centers on the insect visual system. In Drosophila, every photoreceptor type is known, along with how its fate is specified during development and how it is wired into the brain. That reference lets us recognize the cell types other insects have added, repurposed, or rearranged over hundreds of millions of years, and find the genetic changes responsible.

Three questions organize the lab. How do the timing and continuity of transcription set the probability and reliability of a cell fate? How do new neuron types and circuits evolve? And how is a retina divided into regions, and what does that do for the animal? We answer these questions with Drosophila genetics, live imaging of transcription, single-cell genomics, CRISPR and transgenesis in house flies, mosquitoes, and butterflies, and, most recently, directed differentiation of human retinal cells.

The lab is part of the Department of Cell and Developmental Biology at UC San Diego, and we are always glad to hear from prospective students and postdocs.

Perry Lab, group photo

Latest

Butterflies see more color than flies in part because they added a photoreceptor to every unit of the compound eye. Our paper in Science Advances (Gao et al., October 2026) finds the genetic change behind the extra cell, recreates it in a “butterfly-fly,” and shows that the brain was ready for it: neurons that would normally die are retained to wire in the new input.

Read the paper · UCSD Today story

In the news: Earth.com, Times of India

Butterflies added a photoreceptor, and the brain was ready

Butterflies added a photoreceptor, and the brain was ready

Our paper in Science Advances (Gao et al., 2026) shows how butterflies added a second R7 photoreceptor to every unit of the eye, recreates the change in a "butterfly-fly," and finds that neurons that would normally die are retained to wire in the new input. Read the...

Love Spot preprint posted

Love Spot preprint posted

Our preprint "Evolution and integration of a novel cell type in the housefly Love Spot" (Donati et al.) traces how R7 photoreceptors in this male-specific eye region are repurposed for target detection. Read it on bioRxiv.